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    Archived pages: 3 . Archive date: 2013-08.

  • Title: LigerCat
    Descriptive info: .. LigerCat.. Literature and Genomics Resource Catalogue.. Pubmed Queries.. Blast Queries.. Search PubMed Articles.. Search.. PubMed.. using words or even a DNA/protein sequence to create a.. tag cloud.. showing an overview of important concepts and trends.. LigerCat aggregates multiple articles in PubMed, combining the associated.. MeSH.. descriptors into a cloud, weighted by frequency.. Visualize MeSH Descriptors.. Medical Subject Headings (.. ) is a.. controlled vocabulary.. created and maintained by the National Library of Medicine and applied to categorize and index journal articles in biomedical  ...   instantly search PubMed.. for those terms instantly.. Selecting more than one term finds articles tagged with all selected MeSH descriptors.. Search Articles.. Just like you would at PubMed.. Explore Tag Clouds.. Built from the results of your PubMed search.. Craft Queries to PubMed.. By clicking on MeSH Descriptors.. View Publication History.. Articles by year, click to view in PubMed.. Screenshot.. LigerCat is brought to you by the.. Biology of Aging.. project at the.. MBLWHOI Library.. Contact Us.. Citation Information.. New in the latest release..

    Original link path: /
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  • Title: LigerCat
    Descriptive info: BLAST a Gene Sequence.. Paste in FASTA-formatted nucleotides or protein sequences.. Example sequence.. The given sequence is run through BLAST, then searched in PubMed.. Articles by year, relevant to given sequence..

    Original link path: /genes
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  • Title: LigerCat
    Descriptive info: About LigerCat.. LigerCat was created as part of the.. at the.. Woods Hole Marine Biological Laboratory.. LigerCat is a search tool for.. NCBI's PubMed.. that uses.. tag clouds.. to provide an overview of important concepts and trends.. LigerCat aggregates multiple articles in PubMed, summing their.. descriptors and presenting them in a cloud, weighted by frequency.. Medical Subject Headings (MeSH) is a large controlled vocabulary created and maintained by the.. National Library of Medicine.. to categorize and index journal articles in the life sciences.. MeSH descriptors are.. akin to tags.. in a blog post, but scientific articles are tagged with MeSH descriptors by respected librarians and scientists.. In addition to providing a visual overview of a set of PubMed articles, LigerCat can.. search PubMed in realtime.. Simply click on one or more MeSH descriptors in a tag cloud to search PubMed for those terms instantly.. LigerCat's indeces of current MeSH descriptors and their overall occurrence in Medline are provided by the.. Medline Baseline Repository.. September saw the release of the latest version of LigerCat.. It has been completely rebuilt with a brand new, extremely robust and fault-tolerant processing engine.. LigerCat's new engine includes finer grained process tracking.. Now, when you  ...   by the.. Encyclopedia of Life.. , generating LigerCat clouds with taxonomically-aware PubMed queries.. There is now a tighter, self-sustaining integration with the Encyclopedia of Life that links queries for species names in LigerCat to their respective page in EoL, and vice-versa.. Ligercat is now easier to install at your own institution.. We have reduced the number of components in the system to simplify the hosting requirements, and written extensive documentation for hosting LigerCat on your own servers.. Clouds and histograms are now self-updating and we have introduced simple one line commands for seeding and re-seeding MeSH frequency data direct from the.. Medline/PubMed Baseline Repository.. We have disabled the Journals search because the database and web service used to power this feature was deprecated by NCBI.. Please.. contact us.. if you are interested in seeing this feature return.. Cite.. Please cite this resource as show below.. The full text for this article is available at.. PubMed Central.. LigerCat: using “MeSH Clouds” from journal, article, or gene citations to facilitate the identification of relevant biomedical literature.. Sarkar IN, Schenk R, Miller H, Norton CN.. AMIA Annu Symp Proc.. 2009 Nov 14;2009:563-7.. Email Form.. E-mail Address:.. Message:.. Please enter the two words below:..

    Original link path: /about
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  • Archived pages: 3